PopGenome version 2.2.4 will include some new introgression statistics.
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A transformation function will never work on an already transformed GENOME class !
Just apply transformation functions as sliding.window.transform() or splitting.data() only on non-transformed GENOME.class objects. Omg, there is a BUG in the very new function
split_data_into_GFF_attributes () The BUG is fixed now and i will submit PopGenome 2.1.6 ASAP to CRAN. FYI, i could put the new version also here on the website. There were also some annoying print outs in get.feature.names(). Best New PopGenome on CRAN
Changes in PopGenome 2.1.5 =========================== BUG FIXED: - readData(,format="VCF") didn't handle insertions. Those positions are now treated as unknowns - MS() failed for low theta values - minor issue in set.synnonsyn() NEW FEATURES: - region.as.fasta(,type=2) now uses the information stored in the slot GENOME.class.split@region.names to extract the FASTA. - VCF_split_into_scaffolds() - GFF_split_into_scaffolds() - count.unknowns() - new manual on CRAN - split_data_into_GFF_attributes() - get.feature.names() THX: - Mara - Tina - Tony |
AuthorBastian Pfeifer Archives
July 2017
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