PopGenome version 2.2.4 will include some new introgression statistics.
A transformation function will never work on an already transformed GENOME class !
Just apply transformation functions as sliding.window.transform() or splitting.data() only on non-transformed GENOME.class objects.
Omg, there is a BUG in the very new function
The BUG is fixed now and i will submit PopGenome 2.1.6 ASAP to CRAN.
FYI, i could put the new version also here on the website.
There were also some annoying print outs in get.feature.names().
New PopGenome on CRAN
Changes in PopGenome 2.1.5
- readData(,format="VCF") didn't handle insertions.
Those positions are now treated as unknowns
- MS() failed for low theta values
- minor issue in set.synnonsyn()
- region.as.fasta(,type=2) now uses the information
stored in the slot GENOME.firstname.lastname@example.org
to extract the FASTA.
- new manual on CRAN