PopGenome
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PopGenome is an efficient Swiss army knife for population genetics data analysis, able to process individual loci, large sets of loci, or whole genomes. PopGenome not only implements a wide range of population genetics statistics, but also facilitates the easy implementation of new algorithms by other researchers. PopGenome is an R library optimized for speed (via the seamless integration of C code).

PopGenome on CRAN
CITATION:
Pfeifer B, Wittelsbuerger U, Ramos-Onsins SE, Lercher MJ. 2014. PopGenome: an efficient Swiss army knife for population genomic analyses in R. Mol Biol Evol. 31:1929–1936
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