Mon, 13 Jun 2022 23:33:12 -0700WeeblyMon, 03 Jul 2017 21:24:09 GMThttps://popgenome.weebly.com/news/popgenome-224-on-cran-soonPopGenome version 2.2.4 will include some new introgression statistics.

see the pre-print paper on bioRxiv.
"Estimates of Introgression as a Function of Pairwise Distances"]]>Sat, 03 Oct 2015 08:57:00 GMThttps://popgenome.weebly.com/news/noteA transformation function will never work on an already transformed GENOME class !
Just apply transformation functions as sliding.window.transform() or splitting.data() only on non-transformed GENOME.class objects.
]]>Fri, 08 May 2015 16:43:19 GMThttps://popgenome.weebly.com/news/popgenome-216-on-cranSat, 02 May 2015 19:49:22 GMThttps://popgenome.weebly.com/news/bug-in-popgenome-215Omg, there is a BUG in the very new function
split_data_into_GFF_attributes ()

The BUG is fixed now and i will submit PopGenome 2.1.6 ASAP to CRAN.
FYI, i could put the new version also here on the website.
There were also some annoying print outs in get.feature.names().

Best
]]>Sun, 26 Apr 2015 08:01:16 GMThttps://popgenome.weebly.com/news/popgenome-213New PopGenome on CRAN
Changes in PopGenome 2.1.5
===========================
BUG FIXED:
- readData(,format="VCF") didn't handle insertions.
  Those positions are now treated as unknowns
- MS() failed for low theta values  
- minor issue in set.synnonsyn()
NEW FEATURES:
- region.as.fasta(,type=2) now uses the information
  stored in the slot GENOME.class.split@region.names
  to extract the FASTA.
- VCF_split_into_scaffolds()
- GFF_split_into_scaffolds()
- count.unknowns()
- new manual on CRAN
- split_data_into_GFF_attributes()
- get.feature.names()
THX:
- Mara
- Tina
- Tony

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